Structure of daidzin, a naturally occurring anti-alcohol-addiction agent, in complex with human mitochondrial aldehyde dehydrogenase

J Med Chem. 2008 Aug 14;51(15):4482-7. doi: 10.1021/jm800488j. Epub 2008 Jul 10.

Abstract

The ALDH2*2 gene encoding the inactive variant form of mitochondrial aldehyde dehydrogenase (ALDH2) protects nearly all carriers of this gene from alcoholism. Inhibition of ALDH2 has hence become a possible strategy to treat alcoholism. The natural product 7-O-glucosyl-4'-hydroxyisoflavone (daidzin), isolated from the kudzu vine ( Peruraria lobata), is a specific inhibitor of ALDH2 and suppresses ethanol consumption. Daidzin is the active principle in a herbal remedy for "alcohol addiction" and provides a lead for the design of improved ALDH2. The structure of daidzin/ALDH2 in complex at 2.4 A resolution shows the isoflavone moiety of daidzin binding close to the aldehyde substrate-binding site in a hydrophobic cleft and the glucosyl function binding to a hydrophobic patch immediately outside the isoflavone-binding pocket. These observations provide an explanation for both the specificity and affinity of daidzin (IC50 =80 nM) and the affinity of analogues with different substituents at the glucosyl position.

MeSH terms

  • Alcoholism / enzymology*
  • Aldehyde Dehydrogenase / antagonists & inhibitors*
  • Aldehyde Dehydrogenase / metabolism
  • Aldehyde Dehydrogenase 1 Family
  • Aldehyde Dehydrogenase, Mitochondrial
  • Animals
  • Behavior, Addictive / enzymology*
  • Binding Sites
  • Cricetinae
  • Crystallography, X-Ray
  • Humans
  • Isoenzymes / antagonists & inhibitors
  • Isoenzymes / metabolism
  • Isoflavones / chemistry*
  • Isoflavones / pharmacology*
  • Mitochondria / drug effects*
  • Mitochondria / enzymology*
  • Models, Molecular
  • Molecular Structure
  • Retinal Dehydrogenase
  • Structure-Activity Relationship

Substances

  • Isoenzymes
  • Isoflavones
  • daidzin
  • Aldehyde Dehydrogenase 1 Family
  • ALDH2 protein, human
  • Aldehyde Dehydrogenase
  • Aldehyde Dehydrogenase, Mitochondrial
  • ALDH1A1 protein, human
  • Retinal Dehydrogenase

Associated data

  • PDB/2VLE